Credits: Mike Mackenzie

AI4Science Colloquium

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The AI4Science Colloquium is a bi-weekly colloquium series, held on alternating Tuesdays at 14:00 Central European Time. In this colloquium our very own Teodora Pandeva and Fiona Lippert invite renowned speakers to present and discuss their state-of-the-art AI solutions for scientific discovery. Interested? Subscribe to our Email-list to be notified.

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To stay up to date with our activities and be invited to our biweekly AI4Science colloquium series, you may send a request to be included in our emaillist via an email to us with your name, affiliation and a one-sentence motivation for joining.

Next Colloquium

Ultra-fast molecular simulators and data-driven protein design

Date: 1-02-2022 14:00-1500 Central European Winter time

JanMatthisLuckmann

Speaker: Jan-Matthis Lückmann, University of Tübingen

Abstract:

To be announced.

Schedule

  • 18 January 2022 - Andrew Ferguson
  • 1 February 2022 - Jan-Matthis Lückmann
  • 15 February 2022 - Anna Scaife
  • 15 March 2022 - Rajesh Ranganath
  • 29 March 2022 - Katie Bouman
  • 12 April 2022 - Gabriel Vivó-Truyols

Previous Colloquium

Ultra-fast molecular simulators and data-driven protein design

Date: 18-01-2022 14:00-1500 Central European Winter time

AndrewFerguson

Speaker: Andrew Ferguson, Pritzker School of Molecular Engineering, University of Chicago

Abstract:

Data-driven modeling and deep learning present powerful tools that are opening up new paradigms and opportunities in the understanding, discovery, and design of soft and biological materials. In this talk, I will first describe an approach based on latent space simulators to learn ultra-fast surrogate models of protein folding by stacking three specialized deep learning networks to (i) encode a molecular system into a slow latent space, (ii) propagate dynamics in this latent space, and (iii) generatively decode a synthetic molecular trajectory. I will then describe our recent applications of deep representational learning to expose the sequence-function relationship within homologous protein families and to use these principles for the data-driven design and experimental testing of synthetic proteins with new and/or elevated function.

Bio:

Andrew Ferguson is an Associate Professor and Deputy Dean for Equity, Diversity, and Inclusion at the Pritzker School of Molecular Engineering at the University of Chicago. He received an M.Eng. in Chemical Engineering from Imperial College London in 2005, and a Ph.D. in Chemical and Biological Engineering from Princeton University in 2010. From 2010 to 2012 he was a Postdoctoral Fellow of the Ragon Institute of MGH, MIT, and Harvard in the Department of Chemical Engineering at MIT. He commenced his independent career as an Assistant Professor of Materials Science and Engineering at the University of Illinois at Urbana-Champaign in August 2012 and was promoted to Associate Professor of Materials Science and Engineering and Chemical and Biomolecular Engineering in January 2018. He joined the Pritzker School of Molecular Engineering in July 2018. His research uses theory, simulation, and machine learning to understand and design self-assembling materials, macromolecular folding, and antiviral therapies. He is the recipient of a 2020 Dreyfus Foundation Award for Machine Learning in the Chemical Sciences and Engineering, 2018/19 Junior Moulton Medal of the Institution of Chemical Engineers, 2017 UIUC College of Engineering Dean’s Award for Excellence in Research, 2016 AIChE CoMSEF Young Investigator Award for Modeling & Simulation, 2015 ACS OpenEye Outstanding Junior Faculty Award, 2014 NSF CAREER Award, 2014 ACS PRF Doctoral New Investigator, and was named the Institution of Chemical Engineers North America 2013 Young Chemical Engineer of the Year. He is the co-founder of the protein engineering company Evozyne, Inc. (www.evozyne.com).

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For an overview of more previous colloquia, please have a look at out blog.